Garyk Brixi

PhD Student, Stanford University & Arc Institute. Brian Hie Lab.

prof_pic.jpg

I am a Stanford PhD student in the Genetics Department working at the Arc Institute with Professor Brian Hie. I work at the intersection of machine learning and biology, developing new methods to learn from biological sequences.

Previously, I studied Applied Math at Harvard with a secondary in Computer Science. During my time there, I worked with Sergey Ovchinnikov, Pranam Chatterjee, and Liming Liang.

Reach me at gbrixi [at] stanford.edu

selected publications

  1. Systems and Algorithms for Convolutional Multi-Hybrid Language Models at Scale
    Jerome Ku*, Eric Nguyen*, David W Romero*, and 13 more authors
    arXiv preprint arXiv:2503.01868, 2025
  2. Genome modeling and design across all domains of life with Evo 2
    Garyk Brixi*, Matthew G Durrant*, Jerome Ku*, and 49 more authors
    bioRxiv, 2025
  3. Protein language models learn evolutionary statistics of interacting sequence motifs
    Zhidian Zhang*, Hannah K Wayment-Steele*, Garyk Brixi, and 3 more authors
    Proceedings of the National Academy of Sciences, 2024
  4. SaLT&PepPr is an interface-predicting language model for designing peptide-guided protein degraders
    Garyk Brixi*, Tianzheng Ye*, Lauren Hong*, and 8 more authors
    Communications Biology, 2023